Participants of the X Discussions in Structural Molecular Biology

Participants of the X Discussions in Structural Molecular Biology, Nové Hrady, 22 – 24 March 2012

IDFirst nameLast nameemailInstitutionCityPresentTitle of presentation
251GlendaAlquicerglenda.alquicer-at-img.cas.czInstitute of Biotechnology AS CRPrahaShort talkHigh throughput screening of potential GCPII inhibitors by fluorescence polarization
275ValeryAndrushchenkoandrushchenko-at-uochb.cas.czInstitute of Organic Chemistry and Biochemistry AS CRPrahaPosterVibrational Circular Dichroism Study of Isotropic and Liquid Crystalline Phases Formed by Guanine Quadruplexes
234ImrichBarakImrich.barak-at-savba.skInstitute of Molecular Biology, SASBratislavaNone 
238CyrilBarinkacyril.barinka-at-img.cas.czInstitute of Biotechnology AS CRPrahaNone 
260VladenaBauerovavladena.bauerova-at-savba.skInstitute of Molecular Biology, SASBratislavaPosterCharacterization of N-terminal and central part of human ryanodine receptor 2
160DavidBednarmozekjakodekoraci-at-seznam.czMasaryk UniversityBrnoPosterDesign of non-enantioselective enzyme for biodegradation of toxic environmental pollutant 1,2,3-trichloropropane
207MarkBensonmark.benson-at-rigaku.comRigaku EuropeSevenoaksShort talkTo be confirmed
277VitaliBialevichbialevich-at-greentech.czInstitute of Nanobiology and Structural Biology GCRC AS CRNové HradyPosterThe influence of the C-terminal helical domain on ATPase activity in the restriction-modification complex EcoR124I
152LadaBiedermannoválada.biedermannova-at-img.cas.czInstitute of Biotechnology AS CRPrahaShort talkInvestigation of ligand passage in proteins
267JanBilybily-at-biomed.cas.czInstitute of Physiology AS CRPrahaPosterTransient receptor protein C6 and S100A1 protein as binding partners
289ĽubomírBorkoborko.l.jr-at-gmail.comInstitute of Molecular Biology, SASBratislavaPosterThe study of human Ryanodine Receptor 2 N-terminal region responsible for heart disfunction
255TomášBouchal4056-at-mail.muni.czNCBR and CEITECBrnoPosterQSPR models predicting pKa from atomic charges
158JanBrezovskybriza-at-chemi.muni.czMasaryk UniversityBrnoNone 
257MiroslavBrumovskýmbrumovsky-at-chemi.muni.czNCBR and CEITECBrnoShort talkVisualization of atomic charges in molecules: Comparison of available approaches and software tools
218LadislavBumbabumba-at-biomed.cas.czInstitute of Molecular Biology, SASPrahaShort talkAnalysis of biomolecular interactions by surface plasmon resonance
263OndrejCehlarondrej.cehlar-at-savba.skInstitute of Neuroimmunology, SASBratislavaShort talkComplementary structural investigation of intrinsically disordered protein tau, involved in neurodegenerative diseases
208JiriCernyjiri.cerny-at-img.cas.czInstitute of Biotechnology AS CRPrahaShort talkComplete basis set extrapolation and hybrid schemes for geometry gradients and vibrational analysis of noncovalent complexes.
166RadkaChaloupkováradka-at-chemi.muni.czLoschmidt Laboratories, Department of Experimental BiologyBrnoNone 
162EvaChovancováakllupe-at-chemi.muni.czMasaryk UniversityBrnoPosterCAVER 3.0: A tool for analysis of transport pathways in dynamic protein structures
185LukášChrástlukchrast-at-gmail.comMasaryk UniversityBrnoPosterCharacterization of novel haloalkane dehalogenase isolated from psychrophilic bacterium Marinobacter sp. ELB17
237ZuzanaChromikovazuzana.chromikova-at-savba.skInstitute of Molecular Biology, SASBratislavaPosterSpoIIE links asymmetric cell division to compartmentalization of gene expression during sporulation of Bacillus subtilis
151JiriDamborskyjiri-at-chemi.muni.czMasaryk UniversityBrnoNone 
161LukasDaniellukecz.uo-at-gmail.comLoschmidt Laboratories, Masaryk UniversityBrnoPosterDiscovery of Inhibitors of Haloalkane Dehalogenase DmbA by Virtual Screening
242OksanaDegtjarikdegtjarik-at-frov.jcu.czUniversity of South BohemiaNové HradyNone 
150JanDohnálekdohnalek007-at-gmail.comInstitute of Macromolecular Chemistry AS CRPrahaShort talkThe C-type lectin-like fold in natural killer cell receptors
293RadkaDopitováradkaf-at-sci.muni.czCEITEC MUBrnoPosterPreparation and crystallization of AHP2 protein, the signal transmitter from Arabidopsis thaliana (shared with Degtjarik)
181IvanaDrienovskádrienovska-at-mail.muni.czLoschmidt LaboratoriesBrnoShort talkBiochemical Characterization of Haloalkane Dehalogenase DpcA from Psychrobacter cryohalolentis K5: the First Extremophilic Member of the Family
248JarmilaDuškováduskova-at-imc.cas.czInstitute of Macromolecular Chemistry AS CRPrahaNone 
225RudigerEttrichettrich-at-nh.cas.czInstitute of Nanobiology and Structural Biology GCRC AS CRNové HradyPosterCharybdotoxin unbinding from the mKv1.3 potassium channel: A combined computational and experimental study
284BorisFačkovecboris.fackovec-at-vscht.czInstitute of Organic Chemistry and Biochemistry AS CRPrahaShort talkUniversal Stability Model for Globular Proteins
258JanFrömmeljan.frommel-at-centrum.czPalacky UniversityOlomoucNone 
262ZuzanaGelovázuzana.gelova-at-email.czCEITEC-MUBrnoNone 
159ArturGoraartgora-at-gmail.comMasaryk UniversityBrnoShort talkEngineering Tunnels in Enzymes
221JindrichHasekhasek-at-imc.cas.czInstitute of Macromolecular Chemistry AS CRPrahaShort talkIntermolecular interactions displayed by X-ray diffraction
272JiříHellerhellej01-at-prf.jcu.czFROV JČU v ČBNové HradyPosterPhotosynthetic PsbR protein from higher plants
261MichaelaJirkůmichaela.jirku-at-seznam.czInstitute of Physiology AS CRPrahaPosterSPR studies on the interactions of TRP channels and their activity modulators
259TatsianaHolubevaholubeva-at-nh.cas.czUniversity of South BohemiaNové HradyNone 
294JosefHouserhouser-at-mail.muni.czMasaryk UniverzityBrnoShort talkProtein oligomerization in Aleuria aurantia lectin family – importance and difficulties
228RichardHrabalhrabalr-at-vscht.czInstitute of Chemical Technology in PraguePrahaNone 
229LubomírJandaljanda-at-sci.muni.czCEITEC-Masaryk UniversityBrnoNone 
265PetrJeřábekpetr.jerabek-at-natur.cuni.czCharles University in PraguePrahaPosterUtilization of molecular dynamics methods for identification of stable CYP1A2-cytochrome B5 binary complexes
179MiroslavaKacířovámirkakacirova-at-seznam.czCharles University in Prague, Faculty of SciencePrahaShort talkStructural basis of the 14-3-3 protein-dependent inhibition of phosducin function
157ChojiroKojimakojima-at-protein.osaka-u.ac.jpOsaka UniversitySuitaShort talkStructure-based discovery of flowering hormone receptor
175KateřinaKoláčkovákatka-kolackova-at-centrum.czCharles University in Prague, Faculty of SciencePrahaNone 
210PetrKolenkopetr.kolenko-at-biochemtech.uni-halle.deMartin Luther UniversityHalleShort talkBDV matrix protein: from mutation to function
244RadkaKončitíkováRadka.koncitikova-at-centrum.czPalacky UniversityOlomoucShort talkmaize aldehyde dehydrogenases from family 10 and 7
178MiroslavaKopeckakopeckamirka-at-tiscali.czInstitute of Physiology, AS CRPrahaPosterNMR studies of the regulatory domain of tyrosine hydroxylase
246DavidKopecnykopecny_david-at-yahoo.co.ukPalacky UniversityOlomoucPosterStructure-function study on plant S-nitrosoglutathione reductase from tomato
177DaliborKošekdal.kosek-at-gmail.comCharles University in Prague, Faculty of SciencePrahaPosterPreparation of the 14-3-3:ASK1 kinase complex for structural studies
163TanaKoudelakovatangerine-at-chemi.muni.czMasaryk UniversityBrnoPosterEngineering enzyme resistance to organic co-solvent and elevated temperature
287TomášKovaľkoval.tomas-at-gmail.comInstitute of Physics AS CRPrahaPosterReaction mechanism principles of the bifunctional plant nuclease TBN1
205IrenaKratochvilovakrat-at-fzu.czInstitute of Physics AS CRPrahaShort talkCharge Transport in DNA Oligonucleotides with Various Base-Pairing Patterns
232TomasKroupatomas.kroupa-at-vscht.czInstitute of Chemical Technology in PraguePrahaPosterPreparation and structure determination of T41I/T78I mutant of M-PMV matrix protein
286OndřejKroutilokroutil-at-gmail.comUniversity of South BohemiaČeské BudějovicePosterBehavior Of Water, Ions And Small Organic Molecules Near Quatz (101) Surfaces
214VojtěchKubáňmalmed-at-volny.czMasaryk UniversityBrnoNone 
195MilanKuchařkucharm-at-img.cas.czInstitute of Biotechnology AS CRPrahaPosterProtein variants of ABD domain targeting human IL-23 receptor
278PetrKulhanekkulhanek-at-chemi.muni.czMasaryk UniversityBrnoPosterIon Transfer in G4-wires
226DarynaKulikd.o.kulik-at-gmail.comUniversity of South BohemiaNové HradyPosterPreparation of the construct recombinant PsbO protein from higher plants
154IvanaKuta Smatanovaivanaks-at-seznam.czUniversity of South BohemiaNové HradyPosterProtein crystallization studies – complex overview
281MichalKutýkutym-at-seznam.czUniversity of South BohemiaNové HradyPosterPhotosystem II reaction center, QM study of charge distribution and transfer
176SalomeKylarovásalomek-at-seznam.czCharles University in Prague, Faculty of SciencePrahaNone 
170VeronikaLiškováverca.liskova-at-centrum.czMasaryk UniversityBrnoNone 
172EvaMacakovaevamacakova-at-seznam.czInstitute of Physiology, AS CRPrahaShort talkRole of individual phosphorylation sites for the 14-3-3 protein-dependent activation of yeast neutral trehalase Nth1
194PetrMalýpetr.maly-at-img.cas.czInstitute of Biotechnology AS CRPrahaNone 
285RadekMatuškaradek.matuska-at-gmail.comCEITEC-MUBrnoShort talkTheoretical Description of Carbohydrate-Aromatic CH-π Interactions Additive Properties via DFT and Ab Initio Calculations
235JanaMelničákovájana.melnicakova-at-savba.skInstitute of Molecular Biology, SASBratislavaShort talkSpoIISA-SpoIISB proteins as suicide components of Bacillus subtilis
252PavelMikuleckypavel.mikulecky-at-img.cas.czInstitute of Biotechnology AS CRPrahaShort talkIncreasing affinity between interferon gamma and its receptor by computer design of receptor mutations. II. Affinity measurements
292TomášNáhlíknahlik-at-frov.jcu.czUniversity of South BohemiaNové HradyShort talkExperiment based determination of fractal dimensionality of Belousov-Zhabotinsky reaction
254JiriNovaceknovej-at-ncbr.chemi.muni.czMasaryk UniversityBrnoNone 
274PetrNovakpnovak-at-biomed.cas.czIMIC, AS CRPrahaPosterChemical cross-linking and high resolution mass spectrometry for mNKR-P1C protein structure modeling
174TomášObšilobsil-at-natur.cuni.czCharles University in Prague, Faculty of SciencePrahaNone 
173VeronikaObšilováobsilova-at-biomed.cas.czInstitute of Physiology, AS CRPrahaNone 
216VeronikaPapouškováveverunka-at-chemi.muni.czMasaryk UniversityBrnoNone 
164AntonínPavelkaantonin.pavelka-at-gmail.comMasaryk UniversityBrnoNone 
241JiříPavlíčekjiri.pavlicek-at-img.cas.czInstitute of Biotechnology AS CRPrahaNone 
211HanaPetrokovapetrokova-at-img.cas.czInstitute of Biotechnology AS CRPrahaNone 
223MaryiaPlevakaplevako-at-frov.jcu.czUniversity of South BohemiaNové HradyPoster 
149PavelPlevkapplevka-at-purdue.eduPurdue UniversityWest LafayetteShort talkThe structure of enterovirus 71 and its implications for the design of capsid binding anti-viral compounds
206TomasPolivkatpolivka-at-ufb.jcu.czUniversity of South BohemiaČeské BudějoviceShort talkELI Beamlines facility as a new promising tool for structural studies of macromolecules
256LukášPravdaluky.pravda-at-gmail.comNCBR and CEITECBrnoShort talkComputational Methods for Detecting Ligand Accessible Pathways – Approaches and Benchmarking Study
233JanPrchalprchalj-at-vscht.czInstitute of Chemical Technology in PraguePrahaShort talkStructure of Myristoylated Matrix Protein of Mason-Pfizer Monkey Virus and the Role of Phosphatidylinositol-(4,5)-bisphosphate in its Membrane Binding
268VáclavProfantprofant-at-karlov.mff.cuni.czCharles University in PraguePrahaPosterROA study of chondroitin sulphate and its building blocks
243JakubPtáčekjakub.ptacek-at-img.cas.czInstitute of Biotechnology AS CRPrahaPosterStructural and Biochemical Characterization of the Folyl-poly-γ-L-glutamate Hydrolysing Activity of Human Glutamate Carboxypeptidase II
213KarelPuflerkarel.pufler-at-img.cas.czInstitute of Biotechnology AS CRPrahaNone 
250DavidRehareha-at-nh.cas.czInstitute of Nanobiology and Structural Biology GCRC AS CRNové HradyPosterApplication of QM/MM Calculations with Novel Polarized Embedding to Detail Investigation of the Flavoprotein WrbA
236StanislavaResetarovastanislava.resetarova-at-savba.skInstitute of Molecular Biology, SASBratislavaNone 
180LenkaRezabkovalenka.rezabkova-at-seznam.czCharles University in PraguePrahaNone 
269BarboraRezacovarezacova-at-karlov.mff.cuni.czCharles University in PraguePrahaPosterSpectroscopic study of the MADS box
282KarinaRomanovaromanova-at-greentech.czUniversity of South BohemiaNové HradyPosterCell states on the basis of manual detection
296AbdulSamadsamad-at-greentech.czInstitute of Nanobiology and Structural Biology GCRC AS CRNové HradyNone 
148BohdanSchneiderbohdan.schneider-at-gmail.comInstitute of Biotechnology AS CRPrahaShort talkIncreasing affinity between interferon gamma and its receptor by computer design of receptor mutations. I. Design of mutants
283MarekSebelamarek.sebela-at-upol.czPalacky UniversityOlomoucNone 
171JakubŠeberasebera-at-uochb.cas.czInstitute of Organic Chemistry and Biochemistry AS CRPrahaShort talkQuantum chemistry study of repairing function of hOGG1 enzyme
276KatsiarynaShamayevashamayeva-at-greentech.czInstitute of Nanobiology and Structural Biology GCRC AS CRNové HradyPoster How can stalling of translocation activate the endonuclease in the type I restriction-modification system EcoR124I
247VolhaShmidtshmidt-at-frov.jcu.czUniversity of South BohemiaNové HradyPosterImprovement of the PSII purification procedure for crystallization
220Raghvendra PratapSinghraghvendra-pratap.singh-at-isen.iemn.univ-lille1.frUniversity of Science & TechnologyVilleneuve d’ascq, LilleNone 
217DhirajSinhasinha-at-greentech.czInstitute of Nanobiology and Structural Biology GCRC AS CRNové HradyPosterIn silico charecterization of HsdR
249TerezaSkálovát.skalova-at-gmail.comInstitute of Macromolecular Chemistry AS CRPrahaPosterStructural studies of NK receptors and ligands
266VladimírSklenářsklenar-at-chemi.muni.czMasaryk UniversityBrnoNone 
264RostislavSkrabanarostislav.skrabana-at-savba.skInstitute of Neuroimmunology, SASBratislavaPosterNon-robotic high-throughput setup yielding diffraction-quality crystals in nanoliter drops manually assembled by motorized pipette
240ĽubicaŠkultétyováskultety-at-img.cas.czInstitute of Biotechnology AS CRPrahaNone 
141VernonSmithvernon.smith-at-bruker-axs.deBruker AXS GmbHKarlsruheShort talkGetting the best data from your crystal
204ŽofieSovovásovova-at-nh.usbe.cas.czInstitute of Nanobiology and Structural Biology GCRC AS CRNové HradyShort talkThylakoid membrane studied by the means of molecular dynamics
193VojtechSpiwokspiwokv-at-vscht.czInstitute of Chemical Technology in PraguePrahaShort talkStructural bioinformatics of CBS domain
215PavelSrbpavel.srb-at-matfyz.czCharles UniversityPrahaPosterPlasma-membrane permeability of S. cerevisiae by PGSE NMR
253JakubŠtěpánxstepan3-at-chemi.muni.czCEITEC – Central European Institute of TechnologyBrnoPosterReaction Mechanism of MutH Enzyme – Quantum Mechanics/Molecular Mechanics Study
165VeronikaStepankovastepankova.veronika-at-gmail.comLoschmidt Laboratories, Institute of Experimental Biology, Faculty of Science, Masaryk UniversityBrnoPosterMolecular mechanisms of activation and inhibition of haloalkane dehalogenases by organic cosolvents
224JanStránskýstr.jan-at-seznam.czInstitute of Macromolecular Chemistry AS CRPrahaNone 
270LucieSurálucie-at-sura.nameInstitute of Physiology AS CRPrahaPosterThe cluster of acidic residues in the C terminus of TRPA1 contributes to calcium sensing
288EkaterinaSviridovasviridova-at-greentech.czUniversity of South BohemiaNové HradyPosterCRYSTAL STRUCTURE OF THE IRON-REGULATED OUTER MEMBRANE LIPOPROTEIN FrpD (NMB0584) FROM NEISSERIA MENINGITIDIS
167VladimirSychrovskyvladimir.sychrovsky-at-uochb.cas.czInstitute of Organic Chemistry and Biochemistry AS CRPrahaPosterMetalophillic Attraction in the Consecutive T-HgII-T DNA base pairs
183YoshiyukiTanakatanakay-at-m.tohoku.ac.jpTohoku UniversitySendaiLong TalkIsotope-assisted structural chemical analysis of nucleic acids
219KatsiarynaTratsiaktionawow-at-list.ruUniversity of South BohemiaNové HradyPosterCrystallization results and X-ray diffraction of haloalkane dehalogenase DpcA, isolated from Psychrobacter cryohalolentis K5 and   co-crystallized with it’s substrate.
203OlgaTriskova175607-at-mail.muni.czCEITEC, MUBrnoNone 
295TomášTrnkattrnka-at-mail.muni.czMasaryk UniversityBrnoPosterQuantum-chemical insight into the reaction mechanism of polypeptide UDP-GalNAc transferase 2, a retaining glycosyltransferase
245MartinaTylichovamartina.tylichova-at-seznam.czPalacky UniversityOlomoucPosterStructure-function study on maize nucleoside N-ribohydrolase family
196LucieVaňkoválucie.vankova-at-img.cas.czInstitute of Biotechnology AS CRPrahaNone 
153JiriVondrasekjiri.vondrasek-at-uochb.cas.czInstitute of Organic Chemistry and Biochemistry AS CRPrahaNone 
280JiříVymětaljiri.vymetal-at-marge.uochb.cas.czInstitute of Organic Chemistry and Biochemistry AS CRPrahaShort talkComputational study of retro Trp-cage
227MilanZachrdla324489-at-mail.muni.czMasaryk UniversityBrnoPosterImportance of NMR data validation prior to structure calculation
212VojtechZapletal357261-at-mail.muni.czMasaryk University, NCBRBrnoNone 
273AnnaZhyrovazhyrova-at-greentech.czUniversity of South BohemiaNové HradyPosterState trajectory of the Belousov-Zhabotinsky reaction
222LukasŽídeklzidek-at-chemi.muni.czMasaryk UniversityBrnoLong TalkStructural Biology without Structure – Delta Subunit of RNA Polymerase from Bacillus subtilis
279VlastimilZímazima-at-karlov.mff.cuni.czInstitute of Physics, Faculty of Mathematics and Physics, Charles UniversityPrahaPosterComputational modeling of TRPA1 C-terminus
239AnitaZupcanovaanitazupcanova-at-gmail.comUniversity of South BohemiaNové HradyNone 
209IvaZuskovaiva.zuskova-at-seznam.czCharles University in Prague, Faculty of SciencePrahaPosterThe role of weak non-covalent interactions in FOXO4 binding to the target DNA